PUBLICATIONS
2013
| Blake, J. A., Dolan, M., Drabkin, H., Hill, D. P., Ni, L., Sitnikov, D., Bridges, S., Burgess, S., Buza, T., McCarthy, F., Peddinti, D., Pillai, L., Carbon, S., Dietze, H., Ireland, A., Lewis, S. E., Mungall, C. J., Gaudet, P., Chisholm, R. L., Fey, P., Kibbe, W. A., Basu, S., Siegele, D. A., McIntosh, B. K., Renfro, D. P., Zweifel, A. E., Hu, J. C., Brown, N. H., Tweedie, S., Alam-Faruque, Y., Apweiler, R., Auchinchloss, A., Axelsen, K., Bely, B., Blatter, M. -. C., Bonilla, C., Bougueleret, L., Boutet, E., Breuza, L., Bridge, A., Chan, W. M., Chavali, G., Coudert, E., Dimmer, E., Estreicher, A., Famiglietti, L., Feuermann, M., Gos, A., Gruaz-Gumowski, N., Hieta, R., Hinz, U., Hulo, C., Huntley, R., James, J., Jungo, F., Keller, G., Laiho, K., Legge, D., Lemercier, P., Lieberherr, D., Magrane, M., Martin, M. J., Masson, P., Mutowo-Muellenet, P., O'Donovan, C., Pedruzzi, I., Pichler, K., Poggioli, D., Millan, P. P., Poux, S., Rivoire, C., Roechert, B., Sawford, T., Schneider, M., Stutz, A., Sundaram, S., Tognolli, M., Xenarios, I., Foulger, R., Lomax, J., Roncaglia, P., Khodiyar, V. K., Lovering, R. C., Talmud, P. J., Chibucos, M., Giglio, M. G., Chang, H. -. Y., Hunter, S., McAnulla, C., Mitchell, A., Sangrador, A., Stephan, R., Harris, M. A., Oliver, S. G., Rutherford, K., Wood, V., Bahler, J., Lock, A., Kersey, P. J., McDowall, M. D., Staines, D. M., Dwinell, M., Shimoyama, M., Laulederkind, S., Hayman, T., Wang, S. -. J., Petri, V., Lowry, T., D'Eustachio, P., Matthews, L., Balakrishnan, R., Binkley, G., Cherry, J. M., Costanzo, M. C., Dwight, S. S., Engel, S. R., Fisk, D. G., Hitz, B. C., Hong, E. L., Karra, K., Miyasato, S. R., Nash, R. S., Park, J., Skrzypek, M. S., Weng, S., Wong, E. D., Berardini, T. Z., Li, D., Huala, E., Mi, H., Thomas, P. D., Chan, J., Kishore, R., Sternberg, P., Van Auken, K., Howe, D., Westerfield, M., Consortium, G. O. (2013). Gene Ontology Annotations and Resources. NUCLEIC ACIDS RESEARCH 41(D1), D530-D535 doi:10.1093/nar/gks1050. Author URL |
| Gunaratne, J., Schmidt, A., Quandt, A., Neo, S. P., Sarac, O. S., Gracia, T., Loguercio, S., Ahrne, E., Li Hai Xia, R., Tan, K. H., Loessner, C., Bahler, J., Beyer, A., Blackstock, W., Aebersold, R. (2013). Extensive Mass Spectrometry-Based Analysis of the Fission Yeast Proteome: The S. pombe PeptideAtlas. Mol Cell Proteomics doi:10.1074/mcp.M112.023754. Author URL |
| Lehtinen, S., Marsellach, F. X., Codlin, S., Schmidt, A., Clément-Ziza, M., Beyer, A., Bähler, J., Orengo, C., Pancaldi, V. (2013). Stress induces remodelling of yeast interaction and co-expression networks. Mol Biosyst doi:10.1039/c3mb25548d. Author URL |
| Rallis, C., Codlin, S., Bähler, J. (2013). TORC1 signaling inhibition by rapamycin and caffeine affect lifespan, global gene expression and cell proliferation of fission yeast. Aging Cell doi:10.1111/acel.12080. Author URL |
| Valente, L. P., Dehé, P. M., Klutstein, M., Aligianni, S., Watt, S., Bähler, J., Promisel Cooper, J. (2013). Myb-domain protein Teb1 controls histone levels and centromere assembly in fission yeast. EMBO J 32(3), 450-460 doi:10.1038/emboj.2012.339. Author URL |
2012
| Atkinson, S. R., Marguerat, S., Bähler, J. (2012). Exploring long non-coding RNAs through sequencing. Semin Cell Dev Biol 23(2), 200-205 doi:10.1016/j.semcdb.2011.12.003. Author URL |
| Bähler, J. (2012). Genome regulation and evolution analysed by next-generation sequencing. Semin Cell Dev Biol 23(2), 191- doi:10.1016/j.semcdb.2012.02.009. Author URL |
| Blake, J. A., Dolan, M., Drabkin, H., Hill, D. P., Ni, L., Sitnikov, D., Burgess, S., Buza, T., Gresham, C., McCarthy, F., Pillai, L., Wang, H., Carbon, S., Lewis, S. E., Mungall, C. J., Gaudet, P., Chisholm, R. L., Fey, P., Kibbe, W. A., Basu, S., Siegele, D. A., McIntosh, B. K., Renfro, D. P., Zweifel, A. E., Hu, J. C., Brown, N. H., Tweedie, S., Alam-Faruque, Y., Apweiler, R., Auchinchloss, A., Axelsen, K., Argoud-Puy, G., Bely, B., Blatter, M. -. C., Bougueleret, L., Boutet, E., Branconi-Quintaje, S., Breuza, L., Bridge, A., Browne, P., Chan, W. M., Coudert, E., Cusin, I., Dimmer, E., Duek-Roggli, P., Eberhardt, R., Estreicher, A., Famiglietti, L., Ferro-Rojas, S., Feuermann, M., Gardner, M., Gos, A., Gruaz-Gumowski, N., Hinz, U., Hulo, C., Huntley, R., James, J., Jimenez, S., Jungo, F., Keller, G., Laiho, K., Legge, D., Lemercier, P., Lieberherr, D., Magrane, M., Martin, M. J., Masson, P., Moinat, M., O'Donovan, C., Pedruzzi, I., Pichler, K., Poggioli, D., Millan, P. P., Poux, S., Rivoire, C., Roechert, B., Sawford, T., Schneider, M., Sehra, H., Stanley, E., Stutz, A., Sundaram, S., Tognolli, M., Xenarios, I., Foulger, R., Lomax, J., Roncaglia, P., Camon, E., Khodiyar, V. K., Lovering, R. C., Talmud, P. J., Chibucos, M., Giglio, M. G., Dolinski, K., Heinicke, S., Livstone, M. S., Stephan, R., Harris, M. A., Oliver, S. G., Rutherford, K., Wood, V., Bahler, J., Lock, A., Kersey, P. J., McDowall, M. D., Staines, D. M., Dwinell, M., Shimoyama, M., Laulederkind, S., Hayman, T., Wang, S. -. J., Petri, V., Lowry, T., D'Eustachio, P., Matthews, L., Amundsen, C. D., Balakrishnan, R., Binkley, G., Cherry, J. M., Christie, K. R., Costanzo, M. C., Dwight, S. S., Engel, S. R., Fisk, D. G., Hirschman, J. E., Hitz, B. C., Hong, E. L., Karra, K., Krieger, C. J., Miyasato, S. R., Nash, R. S., Park, J., Skrzypek, M. S., Weng, S., Wong, E. D., Berardini, T. Z., Li, D., Huala, E., Slonim, D., Wick, H., Thomas, P., Chan, J., Kishore, R., Sternberg, P., Van Auken, K., Howe, D., Westerfield, M., Consortium, G. O. (2012). The Gene Ontology: Enhancements for 2011. NUCLEIC ACIDS RESEARCH 40(D1), D559-D564 doi:10.1093/nar/gkr1028. Author URL |
| Cherkasova, V., Maury, L. L., Bacikova, D., Pridham, K., Bähler, J., Maraia, R. J. (2012). Altered nuclear tRNA metabolism in La-deleted Schizosaccharomyces pombe is accompanied by a nutritional stress response involving Atf1p and Pcr1p that is suppressible by Xpo-t/Los1p. Mol Biol Cell 23(3), 480-491 doi:10.1091/mbc.E11-08-0732. Author URL |
| Ioannoni, R., Beaudoin, J., Lopez-Maury, L., Codlin, S., Bahler, J., Labbe, S. (2012). Cuf2 Is a Novel Meiosis-Specific Regulatory Factor of Meiosis Maturation. PLoS One 7(4), e36338- doi:10.1371/journal.pone.0036338. Author URL |
| Lackner, D. H., Schmidt, M. W., Wu, S., Wolf, D. A., Bähler, J. (2012). Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast. Genome Biol 13(4), R25- doi:10.1186/gb-2012-13-4-r25. Author URL |
| Marguerat, S., Bähler, J. (2012). Coordinating cell size. Trends Genet 28(11), 560-565 doi:10.1016/j.tig.2012.07.003. Author URL |
| Marguerat, S., Schmidt, A., Codlin, S., Chen, W., Aebersold, R., Bähler, J. (2012). Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells. Cell 151(3), 671-683 doi:10.1016/j.cell.2012.09.019. Author URL |
| Pancaldi, V., Saraç, O. S., Rallis, C., McLean, J. R., Převorovský, M., Gould, K., Beyer, A., Bähler, J. (2012). Predicting the Fission Yeast Protein Interaction Network. G3 (Bethesda) 2(4), 453-467 doi:10.1534/g3.111.001560. Author URL |
| Saraç, O. S., Pancaldi, V., Bähler, J., Beyer, A. (2012). Topology of functional networks predicts physical binding of proteins. Bioinformatics 28(16), 2137-2145 doi:10.1093/bioinformatics/bts351. Author URL |
| Wang, Y., Kallgren, S. P., Reddy, B. D., Kuntz, K., López-Maury, L., Thompson, J., Watt, S., Ma, C., Hou, H., Shi, Y., Yates, J. R., Bähler, J., O'Connell, M. J., Jia, S. (2012). Histone H3 Lysine 14 Acetylation Is Required for Activation of a DNA Damage Checkpoint in Fission Yeast. J Biol Chem 287(6), 4386-4393 doi:10.1074/jbc.M111.329417. Author URL |
| Wood, V., Harris, M. A., McDowall, M. D., Rutherford, K., Vaughan, B. W., Staines, D. M., Aslett, M., Lock, A., Bähler, J., Kersey, P. J., Oliver, S. G. (2012). PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res 40(Database issue), D695-D699 doi:10.1093/nar/gkr853. Author URL |
2011
| Beaudoin, J., Ioannoni, R., López-Maury, L., Bähler, J., Ait-Mohand, S., Guérin, B., Dodani, S. C., Chang, C. J., Labbé, S. (2011). Mfc1 Is a Novel Forespore Membrane Copper Transporter in Meiotic and Sporulating Cells. J Biol Chem 286(39), 34356-34372 doi:10.1074/jbc.M111.280396. Author URL |
| Guha, S., López-Maury, L., Shaw, M., Bähler, J., Norbury, C. J., Agashe, V. R. (2011). Transcriptional and Cellular Responses to Defective Mitochondrial Proteolysis in Fission Yeast. J Mol Biol 408(2), 222-237 doi:10.1016/j.jmb.2011.02.044. Author URL |
| Hansen, K. R., Hazan, I., Shanker, S., Watt, S., Verhein-Hansen, J., Bähler, J., Martienssen, R. A., Partridge, J. F., Cohen, A., Thon, G. (2011). H3K9me-Independent Gene Silencing in Fission Yeast Heterochromatin by Clr5 and Histone Deacetylases. PLoS Genet 7(1), e1001268- doi:10.1371/journal.pgen.1001268. Author URL |
| Helmlinger, D., Marguerat, S., Villén, J., Swaney, D. L., Gygi, S. P., Bähler, J., Winston, F. (2011). Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex. EMBO J 30(14), 2843-2852 doi:10.1038/emboj.2011.181. Author URL |
| Kiely, C. M., Marguerat, S., Garcia, J. F., Madhani, H. D., Bähler, J., Winston, F. (2011). Spt6 Is Required for Heterochromatic Silencing in the Fission Yeast Schizosaccharomyces pombe. Mol Cell Biol 31(20), 4193-4204 doi:10.1128/MCB.05568-11. Author URL |
| Lemieux, C., Marguerat, S., Lafontaine, J., Barbezier, N., Bähler, J., Bachand, F. (2011). A Pre-mRNA Degradation Pathway that Selectively Targets Intron-Containing Genes Requires the Nuclear Poly(A)-Binding Protein. Mol Cell 44(1), 108-119 doi:10.1016/j.molcel.2011.06.035. Author URL |
| Převorovský, M., Atkinson, S. R., Ptáčková, M., McLean, J. R., Gould, K., Folk, P., Půta, F., Bähler, J. (2011). N-Termini of Fungal CSL Transcription Factors Are Disordered, Enriched in Regulatory Motifs and Inhibit DNA Binding in Fission Yeast. PLoS One 6(8), e23650- doi:10.1371/journal.pone.0023650. Author URL |
| Pancaldi, V., Bähler, J. (2011). In silico characterization and prediction of global protein-mRNA interactions in yeast. Nucleic Acids Res 39(14), 5826-5836 doi:10.1093/nar/gkr160. Author URL |
| Reddy, B. D., Wang, Y., Niu, L., Higuchi, E. C., Marguerat, S. B., Bähler, J., Smith, G. R., Jia, S. (2011). Elimination of a specific histone H3K14 acetyltransferase complex bypasses the RNAi pathway to regulate pericentric heterochromatin functions. Genes Dev 25(3), 214-219 doi:10.1101/gad.1993611. Author URL |
| Sun, W., Wang, Z., Jiang, H., Zhang, J., Bähler, J., Chen, D., Murchie, A. I. (2011). A novel function of the mitochondrial transcription factor Mtf1 in fission yeast; Mtf1 regulates the nuclear transcription of srk1. Nucleic Acids Res 39(7), 2690-2700 doi:10.1093/nar/gkq1179. Author URL |
| Wilhelm, B. T., Marguerat, S., Aligianni, S., Codlin, S., Watt, S., Bähler, J. (2011). Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast. Genome Biol 12(8), R82- doi:10.1186/gb-2011-12-8-r82. Author URL |
| Zaratiegui, M., Vaughn, M. W., Irvine, D. V., Goto, D., Watt, S., Bähler, J., Arcangioli, B., Martienssen, R. A. (2011). CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature 469(7328), 112-115 doi:10.1038/nature09608. Author URL |
2010
| Kaufmann, I., White, E., Azad, A., Marguerat, S., Bähler, J., Proudfoot, N. J. (2010). Transcriptional Activation of the General Amino Acid Permease Gene per1 by the Histone Deacetylase Clr6 Is Regulated by Oca2 Kinase. Mol Cell Biol 30(13), 3396-3410 doi:10.1128/MCB.00971-09. Author URL |
| Kiang, L., Heichinger, C., Watt, S., Bähler, J., Nurse, P. (2010). Specific replication origins promote DNA amplification in fission yeast. J Cell Sci 123(Pt 18), 3047-3051 doi:10.1242/jcs.067470. Author URL |
| Lemay, J. F., D'Amours, A., Lemieux, C., Lackner, D. H., St-Sauveur, V. G., Bähler, J., Bachand, F. (2010). The Nuclear Poly(A)-Binding Protein Interacts with the Exosome to Promote Synthesis of Noncoding Small Nucleolar RNAs. Mol Cell 37(1), 34-45 doi:10.1016/j.molcel.2009.12.019. Author URL |
| Marguerat, S., Bähler, J. (2010). RNA-seq: from technology to biology. Cell Mol Life Sci 67(4), 569-579 doi:10.1007/s00018-009-0180-6. Author URL |
| Nemoto, N., Udagawa, T., Ohira, T., Jiang, L., Hirota, K., Wilkinson, C. R., Bähler, J., Jones, N., Ohta, K., Wek, R. C., Asano, K. (2010). The Roles of Stress-Activated Sty1 and Gcn2 Kinases and of the Protooncoprotein Homologue Int6/eIF3e in Responses to Endogenous Oxidative Stress during Histidine Starvation. J Mol Biol 404(2), 183-201 doi:10.1016/j.jmb.2010.09.016. Author URL |
| Onishi, M., Koga, T., Hirata, A., Nakamura, T., Asakawa, H., Shimoda, C., Bähler, J., Wu, J. Q., Takegawa, K., Tachikawa, H., Pringle, J. R., Fukui, Y. (2010). Role of Septins in the Orientation of Forespore Membrane Extension during Sporulation in Fission Yeast. Mol Cell Biol 30(8), 2057-2074 doi:10.1128/MCB.01529-09. Author URL |
| Pancaldi, V., Schubert, F., Bähler, J. (2010). Meta-analysis of genome regulation and expression variability across hundreds of environmental and genetic perturbations in fission yeast. Mol Biosyst 6(3), 543-552 doi:10.1039/b913876p. Author URL |
| St-André, O., Lemieux, C., Perreault, A., Lackner, D. H., Bähler, J., Bachand, F. (2010). Negative Regulation of Meiotic Gene Expression by the Nuclear Poly(a)-binding Protein in Fission Yeast. J Biol Chem 285(36), 27859-27868 doi:10.1074/jbc.M110.150748. Author URL |
| Wen, W. L., Stevenson, A. L., Wang, C. Y., Chen, H. J., Kearsey, S. E., Norbury, C. J., Watt, S., Bähler, J., Wang, S. W. (2010). Vgl1, a multi-KH domain protein, is a novel component of the fission yeast stress granules required for cell survival under thermal stress. Nucleic Acids Res 38(19), 6555-6566 doi:10.1093/nar/gkq555. Author URL |
| Wilhelm, B. T., Marguerat, S., Goodhead, I., Bähler, J. (2010). Defining transcribed regions using RNA-seq. Nat Protoc 5(2), 255-266 doi:10.1038/nprot.2009.229. Author URL |
| Zhurinsky, J., Leonhard, K., Watt, S., Marguerat, S., Bähler, J., Nurse, P. (2010). A Coordinated Global Control over Cellular Transcription. Curr Biol 20(22), 2010-2015 doi:10.1016/j.cub.2010.10.002. Author URL |
2009
| Aligianni, S., Lackner, D. H., Klier, S., Rustici, G., Wilhelm, B. T., Marguerat, S., Codlin, S., Brazma, A., de Bruin, R. A., Bähler, J. (2009). The Fission Yeast Homeodomain Protein Yox1p Binds to MBF and Confines MBF-Dependent Cell-Cycle Transcription to G1-S via Negative Feedback. PLoS Genet 5(8), e1000626- doi:10.1371/journal.pgen.1000626. Author URL |
| Anderson, H. E., Wardle, J., Korkut, S. V., Murton, H. E., López-Maury, L., Bähler, J., Whitehall, S. K. (2009). The Fission Yeast HIRA Histone Chaperone Is Required for Promoter Silencing and the Suppression of Cryptic Antisense Transcripts. Mol Cell Biol 29(18), 5158-5167 doi:10.1128/MCB.00698-09. Author URL |
| Bähler, J. (2009). Global approaches to study gene regulation Guest Editor's Introduction. Methods 48(3), 217- doi:10.1016/j.ymeth.2009.06.006. Author URL |
| Croucher, N. J., Fookes, M. C., Perkins, T. T., Turner, D. J., Marguerat, S. B., Keane, T., Quail, M. A., He, M., Assefa, S., Bähler, J., Kingsley, R. A., Parkhill, J., Bentley, S. D., Dougan, G., Thomson, N. R. (2009). A simple method for directional transcriptome sequencing using Illumina technology. Nucleic Acids Res 37(22), e148- doi:10.1093/nar/gkp811. Author URL |
| Kiang, L., Heichinger, C., Watt, S., Bähler, J., Nurse, P. (2009). Cyclin-Dependent Kinase Inhibits Reinitiation of a Normal S-Phase Program during G(2) in Fission Yeast. Mol Cell Biol 29(15), 4025-4032 doi:10.1128/MCB.00185-09. Author URL |
| Kim, H. S., Vanoosthuyse, V., Fillingham, J., Roguev, A., Watt, S., Kislinger, T., Treyer, A., Carpenter, L. R., Bennett, C. S., Emili, A., Greenblatt, J. F., Hardwick, K. G., Krogan, N. J., Bähler, J., Keogh, M. C. (2009). An acetylated form of histone H2A.Z regulates chromosome architecture in Schizosaccharomyces pombe. Nat Struct Mol Biol 16(12), 1286-1293 doi:10.1038/nsmb.1688. Author URL |
| Schonbrun, M., Laor, D., López-Maury, L., Bähler, J., Kupiec, M., Weisman, R. (2009). TOR Complex 2 Controls Gene Silencing, Telomere Length Maintenance, and Survival under DNA-Damaging Conditions. Mol Cell Biol 29(16), 4584-4594 doi:10.1128/MCB.01879-08. Author URL |
| Tinline-Purvis, H., Savory, A. P., Cullen, J. K., Davé, A., Moss, J., Bridge, W. L., Marguerat, S., Bähler, J., Ragoussis, J., Mott, R., Walker, C. A., Humphrey, T. C. (2009). Failed gene conversion leads to extensive end processing and chromosomal rearrangements in fission yeast. EMBO J 28(21), 3400-3412 doi:10.1038/emboj.2009.265. Author URL |
2008
| Anders, A., Watt, S., Bähler, J., Sawin, K. E. (2008). Improved tools for efficient mapping of fission yeast genes: identification of microtubule nucleation modifier mod22-1 as an allele of chromatin-remodelling factor gene swr1. Yeast 25(12), 913-925 doi:10.1002/yea.1639. Author URL |
| Breitkreutz, B. J., Stark, C., Reguly, T., Boucher, L., Breitkreutz, A., Livstone, M., Oughtred, R., Lackner, D. H., Bähler, J., Wood, V., Dolinski, K., Tyers, M. (2008). The BioGRID interaction database: 2008 update. Nucleic Acids Res 36(Database issue), D637-D640 doi:10.1093/nar/gkm1001. Author URL |
| Chen, D., Wilkinson, C. R., Watt, S., Penkett, C. J., Toone, W. M., Jones, N., Bähler, J. (2008). Multiple pathways differentially regulate global oxidative stress responses in fission yeast. Mol Biol Cell 19(1), 308-317 doi:10.1091/mbc.E07-08-0735. Author URL |
| Dainty, S. J., Kennedy, C. A., Watt, S., Bähler, J., Whitehall, S. K. (2008). Response of Schizosaccharomyces pombe to zinc deficiency. Eukaryot Cell 7(3), 454-464 doi:10.1128/EC.00408-07. Author URL |
| Helmlinger, D., Marguerat, S., Villén, J., Gygi, S. P., Bähler, J., Winston, F. (2008). The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8. Genes Dev 22(22), 3184-3195 doi:10.1101/gad.1719908. Author URL |
| Jeffares, D. C., Penkett, C. J., Bähler, J. (2008). Rapidly regulated genes are intron poor. Trends Genet 24(8), 375-378 doi:10.1016/j.tig.2008.05.006. Author URL |
| López-Maury, L., Marguerat, S., Bähler, J. (2008). Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat Rev Genet 9(8), 583-593 doi:10.1038/nrg2398. Author URL |
| Lackner, D. H., Bähler, J. (2008). TRANSLATIONAL CONTROL OF GENE EXPRESSION: FROM TRANSCRIPTS To TRANSCRIPTOMES. Int Rev Cell Mol Biol 271, 199-251 doi:10.1016/S1937-6448(08)01205-7. Author URL |
| Ludin, K., Mata, J., Watt, S., Lehmann, E., Bähler, J., Kohli, J. (2008). Sites of strong Rec12/Spo11 binding in the fission yeast genome are associated with meiotic recombination and with centromeres. Chromosoma 117(5), 431-444 doi:10.1007/s00412-008-0159-3. Author URL |
| Marguerat, S., Wilhelm, B. T., Bähler, J. (2008). Next-generation sequencing: applications beyond genomes. Biochem Soc Trans 36(Pt 5), 1091-1096 doi:10.1042/BST0361091. Author URL |
| Mercier, A., Watt, S., Bähler, J., Labbé, S. (2008). Key function for the CCAAT-binding factor Php4 to regulate gene expression in response to iron deficiency in fission yeast. Eukaryot Cell 7(3), 493-508 doi:10.1128/EC.00446-07. Author URL |
| Miklos, I., Szilagyi, Z., Watt, S., Zilahi, E., Batta, G., Antunovics, Z., Enczi, K., Bähler, J., Sipiczki, M. (2008). Genomic expression patterns in cell separation mutants of Schizosaccharomyces pombe defective in the genes sep10(+) and sep15(+) coding for the Mediator subunits Med31 and Med8. Mol Genet Genomics 279(3), 225-238 doi:10.1007/s00438-007-0296-z. Author URL |
| Monahan, B. J., Villén, J., Marguerat, S., Bähler, J., Gygi, S. P., Winston, F. (2008). Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast. Nat Struct Mol Biol 15(8), 873-880 doi:10.1038/nsmb.1452. Author URL |
| Reiter, W., Watt, S., Dawson, K., Lawrence, C. L., Bähler, J., Jones, N., Wilkinson, C. R. (2008). Fission yeast MAP kinase Sty1 is recruited to stress-induced genes. J Biol Chem 283(15), 9945-9956 doi:10.1074/jbc.M710428200. Author URL |
| Udagawa, T., Nemoto, N., Wilkinson, C. R., Narashimhan, J., Jiang, L., Watt, S., Zook, A., Jones, N., Wek, R. C., Bähler, J., Asano, K. (2008). Int6/eIF3e promotes general translation and Atf1 abundance to modulate Sty1 MAPK-dependent stress response in fission yeast. J Biol Chem 283(32), 22063-22075 doi:10.1074/jbc.M710017200. Author URL |
| Wang, S. W., Stevenson, A. L., Kearsey, S. E., Watt, S., Bähler, J. (2008). Global role for polyadenylation-assisted nuclear RNA degradation in posttranscriptional gene silencing. Mol Cell Biol 28(2), 656-665 doi:10.1128/MCB.01531-07. Author URL |
| Watt, S., Mata, J., López-Maury, L., Marguerat, S., Burns, G., Bähler, J. (2008). urg1: A Uracil-Regulatable Promoter System for Fission Yeast with Short Induction and Repression Times. PLoS One 3(1), e1428- doi:10.1371/journal.pone.0001428. Author URL |
| Wilhelm, B. T., Marguerat, S., Watt, S., Schubert, F., Wood, V., Goodhead, I., Penkett, C. J., Rogers, J., Bähler, J. (2008). Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 453(7199), 1239-1243 doi:10.1038/nature07002. Author URL |
2007
| Gordon, M., Holt, D. G., Panigrahi, A., Wilhelm, B. T., Erdjument-Bromage, H., Tempst, P., Bähler, J., Cairns, B. R. (2007). Genome-wide dynamics of SAPHIRE, an essential complex for gene activation and chromatin boundaries. Mol Cell Biol 27(11), 4058-4069 doi:10.1128/MCB.02044-06. Author URL |
| Kirmizis, A., Santos-Rosa, H., Penkett, C. J., Singer, M. A., Vermeulen, M., Mann, M., Bähler, J., Green, R. D., Kouzarides, T. (2007). Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation. Nature 449(7164), 928-932 doi:10.1038/nature06160. Author URL |
| Lackner, D. H., Beilharz, T. H., Marguerat, S., Mata, J., Watt, S., Schubert, F., Preiss, T., Bähler, J. (2007). A network of multiple regulatory layers shapes gene expression in fission yeast. Mol Cell 26(1), 145-155 doi:10.1016/j.molcel.2007.03.002. Author URL |
| Marguerat, S., Wilhelm, B. T., Bähler, J. (2007). Shaken not stirred: a global research cocktail served in Hinxton. Genome Biol 8(11), 320- doi:10.1186/gb-2007-8-11-320. Author URL |
| Mata, J., Wilbrey, A., Bähler, J. (2007). Transcriptional regulatory network for sexual differentiation in fission yeast. Genome Biol 8(10), R217- doi:10.1186/gb-2007-8-10-r217. Author URL |
| Rustici, G., van Bakel, H., Lackner, D. H., Holstege, F. C., Wijmenga, C., Bähler, J., Brazma, A. (2007). Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study. Genome Biol 8(5), R73- doi:10.1186/gb-2007-8-5-r73. Author URL |
2006
| Bachand, F., Lackner, D. H., Bähler, J., Silver, P. A. (2006). Autoregulation of ribosome biosynthesis by a translational response in fission yeast. Mol Cell Biol 26(5), 1731-1742 doi:10.1128/MCB.26.5.1731-1742.2006. Author URL |
| Bahler, J., Wood, V. (2006). Probably the best model organism in the world. YEAST 23(13), 899-900 doi:10.1002/yea.1417. |
| Heichinger, C., Penkett, C. J., Bähler, J., Nurse, P. (2006). Genome-wide characterization of fission yeast DNA replication origins. EMBO J 25(21), 5171-5179 doi:10.1038/sj.emboj.7601390. Author URL |
| Marguerat, S., Jensen, T. S., de Lichtenberg, U., Wilhelm, B. T., Jensen, L. J., Bähler, J. (2006). The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast. Yeast 23(4), 261-277 doi:10.1002/yea.1351. Author URL |
| Martín, V., Rodríguez-Gabriel, M. A., McDonald, W. H., Watt, S., Yates, J. R., Bähler, J., Russell, P. (2006). Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress. Mol Biol Cell 17(3), 1176-1183 doi:10.1091/mbc.E05-09-0847. Author URL |
| Mata, J., Bähler, J. (2006). Global roles of Ste11p, cell type, and pheromone in the control of gene expression during early sexual differentiation in fission yeast. Proc Natl Acad Sci U S A 103(42), 15517-15522 doi:10.1073/pnas.0603403103. Author URL |
| Penkett, C. J., Birtle, Z. E., Bähler, J. (2006). Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast. Yeast 23(13), 921-928 doi:10.1002/yea.1422. Author URL |
| Penkett, C. J., Morris, J. A., Wood, V., Bähler, J. (2006). YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms. Nucleic Acids Res 34(Web Server issue), W330-W334 doi:10.1093/nar/gkl311. Author URL |
| Penkett, C. J., Morris, J. A., Wood, V., Bähler, J. (2006). YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms. Nucleic Acids Research Author URL |
| Rodríguez-Gabriel, M. A., Watt, S., Bähler, J., Russell, P. (2006). Upf1, an RNA helicase required for nonsense-mediated mRNA decay, modulates the transcriptional response to oxidative stress in fission yeast. Mol Cell Biol 26(17), 6347-6356 doi:10.1128/MCB.00286-06. Author URL |
| Sharma, N., Marguerat, S., Mehta, S., Watt, S., Bähler, J. (2006). The fission yeast Rpb4 subunit of RNA polymerase II plays a specialized role in cell separation. Mol Genet Genomics 276(6), 545-554 doi:10.1007/s00438-006-0161-5. Author URL |
| Wilhelm, B. T., Bähler, J. (2006). The genomics of stress response in Schizosaccharomyces pombe. In Brown, A. J. P. (Ed.). The Mycota Volume XIII, Fungal Genomics, Transcriptomics, Proteomics and Metabolomics ( pp.97-111). Heidelberg: Springer Verlag. |
2005
| Bähler, J. (2005). A transcriptional pathway for cell separation in fission yeast. Cell Cycle 4(1), 39-41 Author URL |
| Bähler, J. (2005). Cell-cycle control of gene expression in budding and fission yeast. Annu Rev Genet 39, 69-94 doi:10.1146/annurev.genet.39.110304.095808. Author URL |
| Bähler, J., Svetina, S. (2005). A logical circuit for the regulation of fission yeast growth modes. J Theor Biol 237(2), 210-218 doi:10.1016/j.jtbi.2005.04.008. Author URL |
| Hansen, K. R., Burns, G., Mata, J., Volpe, T. A., Martienssen, R. A., Bähler, J., Thon, G. (2005). Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Mol Cell Biol 25(2), 590-601 doi:10.1128/MCB.25.2.590-601.2005. Author URL |
| Harrison, C., Katayama, S., Dhut, S., Chen, D., Jones, N., Bähler, J., Toda, T. (2005). SCFPof1-ubiquitin and its target Zip1 transcription factor mediate cadmium response in fission yeast. EMBO J 24(3), 599-610 doi:10.1038/sj.emboj.7600536. Author URL |
| Jenkins, C. C., Mata, J., Crane, R. F., Thomas, B., Akoulitchev, A., Bähler, J., Norbury, C. J. (2005). Activation of AP-1-Dependent transcription by a truncated translation initiation factor. Eukaryot Cell 4(11), 1840-1850 doi:10.1128/EC.4.11.1840-1850.2005. Author URL |
| Lee, K. M., Miklos, I., Du, H., Watt, S., Szilagyi, Z., Saiz, J. E., Madabhushi, R., Penkett, C. J., Sipiczki, M., Bähler, J., Fisher, R. P. (2005). Impairment of the TFIIH-associated CDK-activating kinase selectively affects cell cycle-regulated gene expression I in fission yeast. Mol Biol Cell 16(6), 2734-2745 doi:10.1091/mbc.E04-11-0982. Author URL |
| Mandell, J. G., Bähler, J., Volpe, T. A., Martienssen, R. A., Cech, T. R. (2005). Global expression changes resulting from loss of telomeric DNA in fission yeast. Genome Biol 6(1), R1- doi:10.1186/gb-2004-6-1-r1. Author URL |
| Mandell, J. G., Goodrich, K. J., Bähler, J., Cech, T. R. (2005). Expression of a RecQ helicase homolog affects progression through crisis in fission yeast lacking telomerase. J Biol Chem 280(7), 5249-5257 doi:10.1074/jbc.M412756200. Author URL |
| Mata, J., Marguerat, S., Bähler, J. (2005). Post-transcriptional control of gene expression: a genome-wide perspective. Trends Biochem Sci 30(9), 506-514 doi:10.1016/j.tibs.2005.07.005. Author URL |
2004
| Bähler, J., Wood, V. (2004). The genome and beyond. In Egel, R. (Ed.). The molecular biology of Schizosaccharomyces pombe ( pp.13-25). Heidelberg: Springer Verlag. |
| Gatti, L., Chen, D., Beretta, G. L., Rustici, G., Carenini, N., Corna, E., Colangelo, D., Zunino, F., Bähler, J., Perego, P. (2004). Global gene expression of fission yeast in response to cisplatin. Cell Mol Life Sci 61(17), 2253-2263 doi:10.1007/s00018-004-4218-5. Author URL |
| Penkett, C. J., Bähler, J. (2004). Getting the most from public microarray data. European Pharmaceutical Review Spring, 8-17 |
| Penkett, C. J., Bähler, J. (2004). Navigating public microarray databases. Comp Funct Genomics 5(6-7), 471-479 doi:10.1002/cfg.427. Author URL |
| Rustici, G., Mata, J., Kivinen, K., Lió, P., Penkett, C. J., Burns, G., Hayles, J., Brazma, A., Nurse, P., Bähler, J. (2004). Periodic gene expression program of the fission yeast cell cycle. Nat Genet 36(8), 809-817 doi:10.1038/ng1377. Author URL |
| Sanders, S. L., Portoso, M., Mata, J., Bähler, J., Allshire, R. C., Kouzarides, T. (2004). Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage. Cell 119(5), 603-614 doi:10.1016/j.cell.2004.11.009. Author URL |
| Watson, A., Mata, J., Bähler, J., Carr, A., Humphrey, T. (2004). Global gene expression responses of fission yeast to ionizing radiation. Mol Biol Cell 15(2), 851-860 doi:10.1091/mbc.E03-08-0569. Author URL |
2003
| Chen, D., Toone, W. M., Mata, J., Lyne, R., Burns, G., Kivinen, K., Brazma, A., Jones, N., Bähler, J. (2003). Global transcriptional responses of fission yeast to environmental stress. Mol Biol Cell 14(1), 214-229 doi:10.1091/mbc.E02-08-0499. Author URL |
| Fardin, P., Bahler, J., Capanni, P., Inglese, E., Ricciardi, A., Ferrara, G. B. (2003). Gene expression analysis in non small cell lung cancer (NSCLC) using microarray technology. GENES AND IMMUNITY. ( Vol. 4 pp.S68-S68). NATURE PUBLISHING GROUP. |
| Lyne, R., Burns, G., Mata, J., Penkett, C. J., Rustici, G., Chen, D., Langford, C., Vetrie, D., Bähler, J. (2003). Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data. BMC Genomics 4(1), 27- doi:10.1186/1471-2164-4-27. Author URL |
| Mata, J., Bahler, J. (2003). Correlations between gene expression and gene conservation in fission yeast. Genome Res 13(12), 2686-2690 doi:10.1101/gr.1420903. Author URL |
| Rodríguez-Gabriel, M. A., Burns, G., McDonald, W. H., Martín, V., Yates, J. R., Bähler, J., Russell, P. (2003). RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress. EMBO J 22(23), 6256-6266 doi:10.1093/emboj/cdg597. Author URL |
2002
| Mata, J., Lyne, R., Burns, G., Bähler, J. (2002). The transcriptional program of meiosis and sporulation in fission yeast. Nat Genet 32(1), 143-147 doi:10.1038/ng951. Author URL |
| Smith, D. A., Toone, W. M., Chen, D., Bahler, J., Jones, N., Morgan, B. A., Quinn, J. (2002). The Srk1 protein kinase is a target for the Sty1 stress-activated MAPK in fission yeast. J Biol Chem 277(36), 33411-33421 doi:10.1074/jbc.M204593200. Author URL |
| Wood, V., Bähler, J. (2002). Website review: How to get the best from fission yeast genome data. Comp Funct Genomics 3(3), 282-288 doi:10.1002/cfg.175. Author URL |
2001
| Bähler, J., Nurse, P. (2001). Fission yeast Pom1p kinase activity is cell cycle regulated and essential for cellular symmetry during growth and division. EMBO J 20(5), 1064-1073 doi:10.1093/emboj/20.5.1064. Author URL |
| Molnar, M., Bähler, J., Kohli, J., Hiraoka, Y. (2001). Live observation of fission yeast meiosis in recombination-deficient mutants: a study on achiasmate chromosome segregation. J Cell Sci 114(Pt 15), 2843-2853 Author URL |
| Rustici, G., Bahler, J. (2001). Study of global gene expression patterns during the fission yeast cell cycle using DNA microarrays. YEAST 18, S99-S99 |
| Wu, J. Q., Bähler, J., Pringle, J. R. (2001). Roles of a fimbrin and an alpha-actinin-like protein in fission yeast cell polarization and cytokinesis. Mol Biol Cell 12(4), 1061-1077 Author URL |
2000
| Bähler, J., Peter, M. (2000). Cell polarity in yeast. In Frontiers in Molecular Biology: Cell Polarity ( pp.21-77). Oxford University Press. |
1998
| Bähler, J., Pringle, J. R. (1998). Pom1p, a fission yeast protein kinase that provides positional information for both polarized growth and cytokinesis. Genes Dev 12(9), 1356-1370 Author URL |
| Bähler, J., Steever, A. B., Wheatley, S., Wang, Y. L., Pringle, J. R., Gould, K. L., McCollum, D. (1998). Role of polo kinase and Mid1p in determining the site of cell division in fission yeast. J Cell Biol 143(6), 1603-1616 Author URL |
| Bähler, J., Wu, J. Q., Longtine, M. S., Shah, N. G., McKenzie, A., Steever, A. B., Wach, A., Philippsen, P., Pringle, J. R. (1998). Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14(10), 943-951 doi:10.1002/(SICI)1097-0061(199807)14:10<943::aid-yea292>3.0.CO;2-Y. Author URL |
| Hartsuiker, E., Bähler, J., Kohli, J. (1998). The role of topoisomerase II in meiotic chromosome condensation and segregation in Schizosaccharomyces pombe. Mol Biol Cell 9(10), 2739-2750 Author URL |
1995
| Interthal, H., Bellocq, C., Bähler, J., Bashkirov, V. I., Edelstein, S., Heyer, W. D. (1995). A ROLE OF SEP1 (=KEM1, XRN1) AS A MICROTUBULE-ASSOCIATED PROTEIN IN SACCHAROMYCES-CEREVISIAE. EMBO J 14(6), 1057-1066 Author URL |
| Molnar, M., Bähler, J., Sipiczki, M., Kohli, J. (1995). THE REC8 GENE OF SCHIZOSACCHAROMYCES-POMBE IS INVOLVED IN LINEAR ELEMENT FORMATION, CHROMOSOME-PAIRING AND SISTER-CHROMATID COHESION DURING MEIOSIS. Genetics 141(1), 61-73 Author URL |
| Svoboda, A., Bähler, J., Kohli, J. (1995). MICROTUBULE-DRIVEN NUCLEAR-MOVEMENTS AND LINEAR ELEMENTS AS MEIOSIS-SPECIFIC CHARACTERISTICS OF THE FISSION YEASTS SCHIZOSACCHAROMYCES-VERSATILIS AND SCHIZOSACCHAROMYCES-POMBE. Chromosoma 104(3), 203-214 Author URL |
1994
| Bähler, J., Hagens, G., Holzinger, G., Scherthan, H., Heyer, W. D. (1994). SACCHAROMYCES-CEREVISIAE CELLS LACKING THE HOMOLOGOUS PAIRING PROTEIN P175(SEP1) ARREST AT PACHYTENE DURING MEIOTIC PROPHASE. Chromosoma 103(2), 129-141 Author URL |
| Grimm, C., Bähler, J., Kohli, J. (1994). M26 RECOMBINATIONAL HOTSPOT AND PHYSICAL CONVERSION TRACT ANALYSIS IN THE ADE6 GENE OF SCHIZOSACCHAROMYCES-POMBE. Genetics 136(1), 41-51 Author URL |
| Kohli, J., Bähler, J. (1994). HOMOLOGOUS RECOMBINATION IN FISSION YEAST - ABSENCE OF CROSSOVER INTERFERENCE AND SYNAPTONEMAL COMPLEX. Experientia 50(3), 295-306 Author URL |
| Scherthan, H., Bähler, J., Kohli, J. (1994). DYNAMICS OF CHROMOSOME ORGANIZATION AND PAIRING DURING MEIOTIC PROPHASE IN FISSION YEAST. J Cell Biol 127(2), 273-285 Author URL |
1993
| Bähler, J., Wyler, T., Loidl, J., Kohli, J. (1993). UNUSUAL NUCLEAR-STRUCTURES IN MEIOTIC PROPHASE OF FISSION YEAST - A CYTOLOGICAL ANALYSIS. J Cell Biol 121(2), 241-256 Author URL |
1991
| Bähler, J., Schuchert, P., Grimm, C., Kohli, J. (1991). SYNCHRONIZED MEIOSIS AND RECOMBINATION IN FISSION YEAST - OBSERVATIONS WITH PAT1-114 DIPLOID-CELLS. Curr Genet 19(6), 445-451 Author URL |